Research output per year
Research output per year
- 1 - 50 out of 1,994 results
Search results
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2024
Activation of human STING by a molecular glue-like compound
Li, J., Canham, S. M., Wu, H., Henault, M., Chen, L., Liu, G., Chen, Y., Yu, G., Miller, H. R., Hornak, V., Brittain, S. M., Michaud, G. A., Tutter, A., Broom, W., Digan, M. E., McWhirter, S. M., Sivick, K. E., Pham, H. T., Chen, C. H., Tria, G. S., & 15 others, Mar 2024, In: Nature chemical biology. 20, 3, p. 365-372 8 p.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
An open chat with… Josep Rizo
Tsagakis, I. & Rizo, J., Jan 1 2024, In: FEBS Open Bio. 14, 1, p. 8-12 5 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Association of genetic variation in COL11A1 with adolescent idiopathic scoliosis
Yu, H., Khanshour, A. M., Ushiki, A., Otomo, N., Koike, Y., Einarsdottir, E., Fan, Y., Antunes, L., Kidane, Y. H., Cornelia, R., Sheng, R. R., Zhang, Y., Pei, J., Grishin, N. V., Evers, B. M., Cheung, J. P. Y., Herring, J. A., Terao, C., Song, Y. Q., Gurnett, C. A., & 5 others, 2024, In: eLife. 13, RP89762.Research output: Contribution to journal › Article › peer-review
Open Access -
A tick saliva serpin, IxsS17 inhibits host innate immune system proteases and enhances host colonization by Lyme disease agent
Nguyen, T. T., Kim, T. H., Bencosme-Cuevas, E., Berry, J., Gaithuma, A. S. K., Ansari, M. A., Kim, T. K., Tirloni, L., Radulovic, Z., Moresco, J. J., Yates, J. R. & Mulenga, A., Feb 2024, In: PLoS pathogens. 20, 2, e1012032.Research output: Contribution to journal › Article › peer-review
Open Access -
Biophysical characterization of the CXC chemokine receptor 2 ligands
Martin, P., Kurth, E. A., Budean, D., Momplaisir, N., Qu, E., Simien, J. M., Orellana, G. E., Brautigam, C. A., Smrcka, A. V. & Haglund, E., Apr 2024, In: PloS one. 19, 4 April, e0298418.Research output: Contribution to journal › Article › peer-review
Open Access -
Challenges and opportunities in macromolecular structure determination
Bai, X. C., Gonen, T., Gronenborn, A. M., Perrakis, A., Thorn, A. & Yang, J., Jan 2024, In: Nature Reviews Molecular Cell Biology. 25, 1, p. 7-12 6 p.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Circulating transthyretin and retinol binding protein 4 levels among middle-age V122I TTR carriers in the general population
Hendren, N. S., De Lemos, J. A., Berry, J. D., Kozlitina, J., Saelices, L., Ji, A. X., Shao, Z., Liu, C. F., Garg, S., Farr, M. A., Drazner, M. H., Tang, W. H. W. & Grodin, J. L., 2024, (Accepted/In press) In: Amyloid.Research output: Contribution to journal › Article › peer-review
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Computational analysis of protein–protein interactions of cancer drivers in renal cell carcinoma
Pei, J., Zhang, J. & Cong, Q., Jan 2024, In: FEBS Open Bio. 14, 1, p. 112-126 15 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Control of Munc13-1 Activity by Autoinhibitory Interactions Involving the Variable N-terminal Region
Xu, J., Esser, V., Gołębiowska-Mendroch, K., Bolembach, A. A. & Rizo, J., Apr 15 2024, In: Journal of Molecular Biology. 436, 8, 168502.Research output: Contribution to journal › Article › peer-review
Open Access -
Deep Learning for Subtypes Identification of Pure Seminoma of the Testis
Medvedev, K. E., Acosta, P. H., Jia, L. & Grishin, N. V., Jan 1 2024, In: Clinical Pathology. 17Research output: Contribution to journal › Article › peer-review
Open Access -
DNP-assisted solid-state NMR enables detection of proteins at nanomolar concentrations in fully protonated cellular milieu
Costello, W. N., Xiao, Y., Mentink-Vigier, F., Kragelj, J. & Frederick, K. K., 2024, (Accepted/In press) In: Journal of biomolecular NMR.Research output: Contribution to journal › Article › peer-review
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ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2
Schaeffer, R. D., Zhang, J., Medvedev, K. E., Kinch, L. N., Cong, Q. & Grishin, N. V., Feb 2024, In: PLoS Computational Biology. 20, 2, e1011586.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Hairpin trimer transition state of amyloid fibril
Sari, L., Bali, S., Joachimiak, L. A. & Lin, M. M., Dec 2024, In: Nature communications. 15, 1, 2756.Research output: Contribution to journal › Article › peer-review
Open Access -
Helical reconstruction of VP39 reveals principles for baculovirus nucleocapsid assembly
Benning, F. M. C., Jenni, S., Garcia, C. Y., Nguyen, T. H., Zhang, X. & Chao, L. H., Dec 2024, In: Nature communications. 15, 1, 250.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Identification of FDA-approved drugs that induce heart regeneration in mammals
Ahmed, M. S., Nguyen, N. U. N., Nakada, Y., Hsu, C. C., Farag, A., Lam, N. T., Wang, P., Thet, S., Menendez-Montes, I., Elhelaly, W. M., Lou, X., Secco, I., Tomczyk, M., Zentilin, L., Pei, J., Cui, M., Dos Santos, M., Liu, X., Liu, Y., Zaha, D., & 8 others, Mar 2024, In: Nature Cardiovascular Research. 3, 3, p. 372-388 17 p.Research output: Contribution to journal › Article › peer-review
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Interface-acting nucleotide controls polymerization dynamics at microtubule plus-and minus-ends
McCormick, L. A., Cleary, J. M., Hancock, W. O. & Rice, L. M., 2024, In: eLife. 13, RP89231.Research output: Contribution to journal › Article › peer-review
Open Access -
Local structural preferences in shaping tau amyloid polymorphism
Louros, N., Wilkinson, M., Tsaka, G., Ramakers, M., Morelli, C., Garcia, T., Gallardo, R., D’Haeyer, S., Goossens, V., Audenaert, D., Thal, D. R., Mackenzie, I. R., Rademakers, R., Ranson, N. A., Radford, S. E., Rousseau, F. & Schymkowitz, J., Dec 2024, In: Nature communications. 15, 1Research output: Contribution to journal › Article › peer-review
Open Access -
Mimicking Protein Kinase C Phosphorylation Inhibits Arc/Arg3.1 Palmitoylation and Its Interaction with Nucleic Acids
Barylko, B., Taylor, C. A., Wang, J., Earnest, S., Stippec, S., Binns, D. D., Brautigam, C. A., Jameson, D. M., DeMartino, G. N., Cobb, M. H. & Albanesi, J. P., Jan 2024, In: International journal of molecular sciences. 25, 2, 780.Research output: Contribution to journal › Article › peer-review
Open Access -
N-glycosylation as a eukaryotic protective mechanism against protein aggregation
Duran-Romaña, R., Houben, B., De Vleeschouwer, M., Louros, N., Wilson, M. P., Matthijs, G., Schymkowitz, J. & Rousseau, F., Feb 2024, In: Science Advances. 10, 5, eadk8173.Research output: Contribution to journal › Article › peer-review
Open Access -
Novel orexin receptor agonists based on arene- or pyridine-fused 1,3-dihydro-2H-imidazole-2-imines
Wang, W., Ranjan, A., Zhang, W., Liang, Q., MacMillan, K. S., Chapman, K., Wang, X., Chandrasekaran, P., Williams, N. S., Rosenbaum, D. M. & De Brabander, J. K., Feb 1 2024, In: Bioorganic and Medicinal Chemistry Letters. 99, 129624.Research output: Contribution to journal › Article › peer-review
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O-GlcNAc forces an α-synuclein amyloid strain with notably diminished seeding and pathology
Balana, A. T., Mahul-Mellier, A. L., Nguyen, B. A., Horvath, M., Javed, A., Hard, E. R., Jasiqi, Y., Singh, P., Afrin, S., Pedretti, R., Singh, V., Lee, V. M. Y., Luk, K. C., Saelices, L., Lashuel, H. A. & Pratt, M. R., 2024, (Accepted/In press) In: Nature chemical biology.Research output: Contribution to journal › Article › peer-review
Open Access -
Poxvirus A51R proteins regulate microtubule stability and antagonize a cell-intrinsic antiviral response
Seo, D., Brito Oliveira, S., Rex, E. A., Ye, X., Rice, L. M., da Fonseca, F. G. & Gammon, D. B., Mar 26 2024, In: Cell Reports. 43, 3, 113882.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Pseudomonas effector AvrB is a glycosyltransferase that rhamnosylates plant guardee protein RIN4
Peng, W., Garcia, N., Servage, K. A., Kohler, J. J., Ready, J. M., Tomchick, D. R., Fernandez, J. & Orth, K., 2024, In: Science Advances. 10, 7, eadd5108.Research output: Contribution to journal › Article › peer-review
Open Access -
Structural polymorphism of amyloid fibrils in ATTR amyloidosis revealed by cryo-electron microscopy
Nguyen, B. A., Singh, V., Afrin, S., Yakubovska, A., Wang, L., Ahmed, Y., Pedretti, R., Fernandez-Ramirez, M. D. C., Singh, P., Pękała, M., Cabrera Hernandez, L. O., Kumar, S., Lemoff, A., Gonzalez-Prieto, R., Sawaya, M. R., Eisenberg, D. S., Benson, M. D. & Saelices, L., Dec 2024, In: Nature communications. 15, 1, 581.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis
Cruz, V. E., Weirich, C. S., Peddada, N. & Erzberger, J. P., Dec 2024, In: Nature communications. 15, 1, 3296.Research output: Contribution to journal › Article › peer-review
Open Access -
The MBO2/FAP58 heterodimer stabilizes assembly of inner arm dynein b and reveals axoneme asymmetries involved in ciliary waveform
Fu, G., Augspurger, K., Sakizadeh, J., Reck, J., Bower, R., Tritschler, D., Gui, L., Nicastro, D. & Porter, M. E., May 1 2024, In: Molecular biology of the cell. 35, 5, p. ar72Research output: Contribution to journal › Article › peer-review
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Tld1 is a regulator of triglyceride lipolysis that demarcates a lipid droplet subpopulation
Speer, N. O., Jay Braun, R., Reynolds, E. G., Brudnicka, A., Swanson, J. M. J. & Mike Henne, W., Jan 1 2024, In: Journal of Cell Biology. 223, 1, e202303026.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Viable mutations of mouse midnolin suppress B cell malignancies
Zhong, X., Peddada, N., Moresco, J. J., Wang, J., Jiang, Y., Rios, J. J., Moresco, E. M. Y., Choi, J. H. & Beutler, B., Jun 3 2024, In: The Journal of experimental medicine. 221, 6Research output: Contribution to journal › Article › peer-review
Open Access -
What one genus of showy moths can say about migration, adaptation, and wing pattern
Zhang, J., Cong, Q., Shen, J., Song, L., Hallwachs, W., Janzen, D. H., Sourakov, A. & Grishin, N. V., Apr 23 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 17, p. e2319726121Research output: Contribution to journal › Article › peer-review
Open Access -
2023
A comprehensive model of Drosophila epithelium reveals the role of embryo geometry and cell topology in mechanical responses
Cheikh, M. I., Tchoufag, J., Osterfield, M., Dean, K., Bhaduri, S., Zhang, C., Mandadapu, K. K. & Doubrovinski, K., 2023, In: eLife. 12, e85569.Research output: Contribution to journal › Article › peer-review
Open Access -
AFTM: a database of transmembrane regions in the human proteome predicted by AlphaFold
Pei, J. & Cong, Q., 2023, In: Database. 2023, baad008.Research output: Contribution to journal › Article › peer-review
Open Access -
A murine model of hnRNPH2-related neurodevelopmental disorder reveals a mechanism for genetic compensation by Hnrnph1
Korff, A., Yang, X., O'Donovan, K., Gonzalez, A., Teubner, B. J. W., Nakamura, H., Messing, J., Yang, F., Carisey, A. F., Wang, Y. D., Patni, T., Sheppard, H., Zakharenko, S. S., Chook, Y. M., Taylor, J. P. & Kim, H. J., Jul 17 2023, In: Journal of Clinical Investigation. 133, 14, e160309.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Analysis of tripartite Synaptotagmin-1-SNARE-complexin-1 complexes in solution
Jaczynska, K., Esquivies, L., Pfuetzner, R. A., Alten, B., Brewer, K. D., Zhou, Q., Kavalali, E. T., Brunger, A. T. & Rizo, J., Jan 2023, In: FEBS Open Bio. 13, 1, p. 26-50 25 p.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
A new Karyopherin-β2 binding PY-NLS epitope of HNRNPH2 linked to neurodevelopmental disorders
Gonzalez, A., Kim, H. J., Freibaum, B. D., Fung, H. Y. J., Brautigam, C. A., Taylor, J. P. & Chook, Y. M., Aug 3 2023, In: Structure. 31, 8, p. 924-934.e4Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Arg-tRNA synthetase links inflammatory metabolism to RNA splicing and nuclear trafficking via SRRM2
Cui, H., Diedrich, J. K., Wu, D. C., Lim, J. J., Nottingham, R. M., Moresco, J. J., Yates, J. R., Blencowe, B. J., Lambowitz, A. M. & Schimmel, P., Apr 2023, In: Nature cell biology. 25, 4, p. 592-603 12 p.Research output: Contribution to journal › Article › peer-review
7 Scopus citations -
A simple flash and freeze system for cryogenic time-resolved electron microscopy
Bhattacharjee, B., Rahman, M. M., Hibbs, R. E. & Stowell, M. H. B., 2023, In: Frontiers in Molecular Biosciences. 10, 1129225.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Assessing risk for butterflies in the context of climate change, demographic uncertainty, and heterogeneous data sources
Forister, M. L., Grames, E. M., Halsch, C. A., Burls, K. J., Carroll, C. F., Bell, K. L., Jahner, J. P., Bradford, T. A., Zhang, J., Cong, Q., Grishin, N. V., Glassberg, J., Shapiro, A. M. & Riecke, T. V., Aug 2023, In: Ecological Monographs. 93, 3, e1584.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Asymmetric gating of a human hetero-pentameric glycine receptor
Liu, X. & Wang, W., Dec 2023, In: Nature communications. 14, 1, 6377.Research output: Contribution to journal › Article › peer-review
Open Access -
Biophysical and biochemical studies support TP0094 as a phosphotransacetylase in an acetogenic energy-conservation pathway in Treponema pallidum
Brautigam, C. A., Deka, R. K., Tso, S. C., Liu, W. Z. & Norgard, M. V., May 2023, In: PloS one. 18, 5 May, e0283952.Research output: Contribution to journal › Article › peer-review
Open Access -
Cabazitaxel-Loaded Nanoparticles Reduce the Invasiveness in Metastatic Prostate Cancer Cells: Beyond the Classical Taxane Function
Lampe, J. B., Desai, P. P., Tripathi, A. K., Sabnis, N. A., Chen, Z., Ranjan, A. P. & Vishwanatha, J. K., Feb 2023, In: Pharmaceutics. 15, 2, 662.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Classification of domains in predicted structures of the human proteome
Schaeffer, R. D., Zhang, J., Kinch, L. N., Pei, J., Cong, Q. & Grishin, N. V., Mar 21 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 12, e2214069120.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
Combining target enrichment and Sanger sequencing data to clarify the systematics of the diverse Neotropical butterfly subtribe Euptychiina (Nymphalidae, Satyrinae)
Espeland, M., Nakahara, S., Zacca, T., Barbosa, E. P., Huertas, B., Marín, M. A., Lamas, G., Benmesbah, M., Brévignon, C., Casagrande, M. M., Fåhraeus, C., Grishin, N., Kawahara, A. Y., Mielke, O. H. H., Miller, J. Y., Nakamura, I., Navas, V., Patrusky, B., Pyrcz, T. W., Richards, L., & 7 others, Oct 2023, In: Systematic Entomology. 48, 4, p. 498-570 73 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Computational analysis of regulatory regions in human protein kinases
Pei, J. & Cong, Q., Oct 2023, In: Protein Science. 32, 10, e4764.Research output: Contribution to journal › Article › peer-review
Open Access -
Confinement of unliganded EGFR by tetraspanin nanodomains gates EGFR ligand binding and signaling
Sugiyama, M. G., Brown, A. I., Vega-Lugo, J., Borges, J. P., Scott, A. M., Jaqaman, K., Fairn, G. D. & Antonescu, C. N., Dec 2023, In: Nature communications. 14, 1, 2681.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Conformational ensembles explain NMR spectra of frozen intrinsically disordered proteins
Kragelj, J., Dumarieh, R., Xiao, Y. & Frederick, K. K., May 2023, In: Protein Science. 32, 5, e4628.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Coupling of protein condensates to ordered lipid domains determines functional membrane organization
Wang, H. Y., Chan, S. H., Dey, S., Castello-Serrano, I., Rosen, M. K., Ditlev, J. A., Levental, K. R. & Levental, I., Apr 2023, In: Science Advances. 9, 17, eadf6205.Research output: Contribution to journal › Article › peer-review
Open Access25 Scopus citations -
CryoEM single particle reconstruction with a complex-valued particle stack
Bromberg, R., Guo, Y., Borek, D. & Otwinowski, Z., Jun 2023, In: Journal of Structural Biology. 215, 2, 107945.Research output: Contribution to journal › Article › peer-review
Open Access -
Cryo-EM structures of Myomaker reveal a molecular basis for myoblast fusion
Long, T., Zhang, Y., Donnelly, L., Li, H., Pien, Y. C., Liu, N., Olson, E. N. & Li, X., Nov 2023, In: Nature Structural and Molecular Biology. 30, 11, p. 1746-1754 9 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
CTCF and R-loops are boundaries of cohesin-mediated DNA looping
Zhang, H., Shi, Z., Banigan, E. J., Kim, Y., Yu, H., Bai, X. C. & Finkelstein, I. J., Aug 17 2023, In: Molecular cell. 83, 16, p. 2856-2871.e8Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations -
Differential Precipitation of Proteins: A Simple Protein Fractionation Strategy to Gain Biological Insights with Proteomics
Pinto, A. F. M., Diedrich, J. K., Moresco, J. J. & Yates, J. R., Sep 6 2023, In: Journal of the American Society for Mass Spectrometry. 34, 9, p. 2025-2033 9 p.Research output: Contribution to journal › Article › peer-review
2 Scopus citations