@article{169dd67258174483918f8ceace4e06ae,
title = "The UCSC Genome Browser database: Extensions and updates 2013",
abstract = "The University of California Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence and annotations for a wide variety of organisms. The Browser is an integrated tool set for visualizing, comparing, analysing and sharing both publicly available and user-generated genomic datasets. As of September 2012, genomic sequence and a basic set of annotation 'tracks' are provided for 63 organisms, including 26 mammals, 13 non-mammal vertebrates, 3 invertebrate deuterostomes, 13 insects, 6 worms, yeast and sea hare. In the past year 19 new genome assemblies have been added, and we anticipate releasing another 28 in early 2013. Further, a large number of annotation tracks have been either added, updated by contributors or remapped to the latest human reference genome. Among these are an updated UCSC Genes track for human and mouse assemblies. We have also introduced several features to improve usability, including new navigation menus. This article provides an update to the UCSC Genome Browser database, which has been previously featured in the Database issue of this journal.",
author = "Meyer, {Laurence R.} and Zweig, {Ann S.} and Hinrichs, {Angie S.} and Donna Karolchik and Kuhn, {Robert M.} and Matthew Wong and Sloan, {Cricket A.} and Rosenbloom, {Kate R.} and Greg Roe and Brooke Rhead and Raney, {Brian J.} and Andy Pohl and Malladi, {Venkat S.} and Li, {Chin H.} and Lee, {Brian T.} and Katrina Learned and Vanessa Kirkup and Fan Hsu and Steve Heitner and Harte, {Rachel A.} and Maximilian Haeussler and Luvina Guruvadoo and Mary Goldman and Giardine, {Belinda M.} and Fujita, {Pauline A.} and Dreszer, {Timothy R.} and Mark Diekhans and Cline, {Melissa S.} and Hiram Clawson and Barber, {Galt P.} and David Haussler and Kent, {W. James}",
note = "Funding Information: National Human Genome Research Institute [P41HG002371 to G.P.B., H.C., M.D., P.A.F., A.S.H., F.H., D.K., V.K., W.J.K., R.M.K., B.T.L., C.H.L., L.R.M, A.P., B.J.R., B.R., G.R. and A.S.Z.; U41HG004568 to M.S.C., T.R.D., M.G., F.H., W.J.K., K.L., V.S.M., B.J.R., K.R.R., C.A.S. and M.W.; and subcontracts from P01HG5062 to G.P.B., W.J.K. and B.R; U54HG004555 to M.D. and R.A.H.; U41HG004269 to A.S.H. and W.J.K.; U01HG004695 to W.J.K.]; subcontracts from the National Institute of Dental and Craniofacial Research [U01DE20057 to G.P.B. and R.M.K.]; National Institute of Child Health and Human Development [RC2HD064525 to H.C., A.S.H. and R.M.K.]; National Institute of Environmental Health Sciences [U01ES017154 to W.J.K]. European Molecular Biology Organization Long-Term Fellowship (ALTF 292-2011 to M.H.). Support from Howard Hughes Medical Institute (to D.H.). Funding for open access charge: Howard Hughes Medical Institute.",
year = "2013",
month = jan,
day = "1",
doi = "10.1093/nar/gks1048",
language = "English (US)",
volume = "41",
pages = "D64--D69",
journal = "Nucleic acids research",
issn = "0305-1048",
publisher = "Oxford University Press",
number = "D1",
}