TY - JOUR
T1 - The structural basis of substrate recognition by the eukaryotic chaperonin TRiC/CCT
AU - Joachimiak, Lukasz A.
AU - Walzthoeni, Thomas
AU - Liu, Corey W.
AU - Aebersold, Ruedi
AU - Frydman, Judith
N1 - Funding Information:
We thank Drs. R. Andino, A. Joachimiak, D. Gestaut, and K. Dalton for comments on the manuscript and Drs. L. Gierasch and D. Agard for advice. We thank Dr. M. Eckart from the PAN facility for help with the SPR experiments. This work was supported by an NIH fellowship to L.A.J., NIH grants to J.F., ERC grant to R.A. (Proteomics v3.0; AdG-233226 to R.A.), and funds from ETH Zurich to R.A. and T.W.
Funding Information:
L.A.J. and J.F. conceived the project and designed and interpreted experiments. L.A.J. cloned, expressed, and purified all apical domain proteins, performed SPR experiments and modeling calculations, and prepared the TRiC-substrate complexes for XL-MS. L.A.J. and C.W.L. performed all NMR experiments. The 800 MHz Agilent VNMRS console was purchased with funds from NIH Shared Instrumentation Grant 1 S10 RR025612-01A1. T.W. performed XL-MS experiments; T.W. and R.A. carried out the XL-MS analysis and interpreted the data. L.A.J. and J.F. wrote the manuscript. All authors contributed to the preparation of the manuscript.
Publisher Copyright:
© 2014 Elsevier Ltd. All rights reserved.
PY - 2014/11/20
Y1 - 2014/11/20
N2 - The eukaryotic chaperonin TRiC (also called CCT) is the obligate chaperone for many essential proteins. TRiC is hetero-oligomeric, comprising two stacked rings of eight different subunits each. Subunit diversification from simpler archaeal chaperonins appears linked to proteome expansion. Here, we integrate structural, biophysical, and modeling approaches to identify the hitherto unknown substrate-binding site in TRiC and uncover the basis of substrate recognition. NMR and modeling provided a structural model of a chaperonin-substrate complex. Mutagenesis and crosslinking-mass spectrometry validated the identified substrate-binding interface and demonstrate that TRiC contacts full-length substrates combinatorially in a subunit-specific manner. The binding site of each subunit has a distinct, evolutionarily conserved pattern of polar and hydrophobic residues specifying recognition of discrete substrate motifs. The combinatorial recognition of polypeptides broadens the specificity of TRiC and may direct the topology of bound polypeptides along a productive folding trajectory, contributing to TRiC's unique ability to fold obligate substrates.
AB - The eukaryotic chaperonin TRiC (also called CCT) is the obligate chaperone for many essential proteins. TRiC is hetero-oligomeric, comprising two stacked rings of eight different subunits each. Subunit diversification from simpler archaeal chaperonins appears linked to proteome expansion. Here, we integrate structural, biophysical, and modeling approaches to identify the hitherto unknown substrate-binding site in TRiC and uncover the basis of substrate recognition. NMR and modeling provided a structural model of a chaperonin-substrate complex. Mutagenesis and crosslinking-mass spectrometry validated the identified substrate-binding interface and demonstrate that TRiC contacts full-length substrates combinatorially in a subunit-specific manner. The binding site of each subunit has a distinct, evolutionarily conserved pattern of polar and hydrophobic residues specifying recognition of discrete substrate motifs. The combinatorial recognition of polypeptides broadens the specificity of TRiC and may direct the topology of bound polypeptides along a productive folding trajectory, contributing to TRiC's unique ability to fold obligate substrates.
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U2 - 10.1016/j.cell.2014.10.042
DO - 10.1016/j.cell.2014.10.042
M3 - Article
C2 - 25416944
AN - SCOPUS:84911887217
SN - 0092-8674
VL - 159
SP - 1042
EP - 1055
JO - Cell
JF - Cell
IS - 5
ER -