TY - JOUR
T1 - Reproducibility and accuracy of microscale thermophoresis in the NanoTemper Monolith
T2 - a multi laboratory benchmark study
AU - López-Méndez, Blanca
AU - Baron, Bruno
AU - Brautigam, Chad A.
AU - Jowitt, Thomas A.
AU - Knauer, Stefan H.
AU - Uebel, Stephan
AU - Williams, Mark A.
AU - Sedivy, Arthur
AU - Abian, Olga
AU - Abreu, Celeste
AU - Adamczyk, Malgorzata
AU - Bal, Wojciech
AU - Berger, Sylvie
AU - Buell, Alexander K.
AU - Carolis, Carlo
AU - Daviter, Tina
AU - Fish, Alexander
AU - Garcia-Alai, Maria
AU - Guenther, Christian
AU - Hamacek, Josef
AU - Holková, Jitka
AU - Houser, Josef
AU - Johnson, Chris
AU - Kelly, Sharon
AU - Leech, Andrew
AU - Mas, Caroline
AU - Matulis, Daumantas
AU - McLaughlin, Stephen H.
AU - Montserret, Roland
AU - Nasreddine, Rouba
AU - Nehmé, Reine
AU - Nguyen, Quyen
AU - Ortega-Alarcón, David
AU - Perez, Kathryn
AU - Pirc, Katja
AU - Piszczek, Grzegorz
AU - Podobnik, Marjetka
AU - Rodrigo, Natalia
AU - Rokov-Plavec, Jasmina
AU - Schaefer, Susanne
AU - Sharpe, Tim
AU - Southall, June
AU - Staunton, David
AU - Tavares, Pedro
AU - Vanek, Ondrej
AU - Weyand, Michael
AU - Wu, Di
N1 - Funding Information:
Huge acknowledgments must go to NanoTemper who helped a lot to make this benchmark happen. They provided the labeling kits and capillaries needed for the benchmark as well as the logistic means of sending the benchmark samples to all participants. They also contributed with 6 instruments to the benchmark measurements. Special thanks go to Amit Gupta and Matthias Molnar for their constant support and several discussions about planning of the benchmark, proper data analysis and interpretation of the data. All authors acknowledge the COST Action project ARBRE-MOBIEU CA15126 under the auspices of whose Working Group 4 this study was carried out. ARBRE-MOBIEU COST Action CA15126 funded meetings in the Center for Protein Research, University of Copenhagen (ECOST-MEETING-CA15126-280618-098884) to organize this study and in the Vienna Biocenter Core Facilities GmbH (ECOST-MEETING-CA15126-121119-111544) to discuss the results of the benchmark. Arthur Sedivy acknowledges Peggy Stolt-Bergner for her support and the chance to plan and conduct such a benchmark within the scope of VBCF ProTech. Tina Daviter acknowledges Dr. Mark Pfuhl, King’s College London, UK, for access to the Monolith. Ondřej Vaněk acknowledges support from the Ministry of Education, Youth and Sports of the Czech Republic (LTC17065 in frame of the COST Action CA15126). Jitka Holková and Josef Houser acknowledge CF Biomolecular Interactions and Crystallization of CIISB, Instruct-CZ Centre, supported by MEYS CR (LM2018127). Jasmina Rokov-Plavec acknowledges support from the Croatian Science Foundation (IP-2016-06-6272). Alexander K. Buell thanks the Novo Nordisk Foundation (grant number NNFSA170028392) for funding. Blanca López-Méndez acknowledges Professor Guillermo Montoya for support during this project, Li Peng Lundgren for preliminary MST/TRIC experiments (STMS 37745 in the frame of the COST Action CA15126) and the COST Action (CA15126) for a STMS (STMS 44783) for the data analysis. The Novo Nordisk Foundation Center for Protein Research is supported financially by the Novo Nordisk Foundation (Grant agreement NNF14CC0001). Maria Garcia-Alai acknowledges technical support by the SPC facility at EMBL Hamburg. Katja Pirc and Marjetka Podobnik acknowledge the grant by the Slovenian Research Agency P1-0391 (Title: Molecular Interactions). This research was funded by Fondo de Investigaciones Sanitarias from Instituto de Salud Carlos III and European Union (ERDF/ESF, “Investing in your future” PI18/00349 and Diputación General de Aragón Digestive Pathology Group B25_17R to O.A. Spanish Ministry of Science, Innovation and Universities, FPI Predoctoral Research Contract BES-2017-080739 to D.O.A. This research was funded by project no 2015/17/B/NZ2/01160 (granted to MA), we also acknowledge financial support, from the Faculty of Chemistry at Warsaw University of Technology. As part of the Federal FTI strategy, this work was generously supported by the City of Vienna and the Austrian Ministry for Education, Science and Research.
Publisher Copyright:
© 2021, European Biophysical Societies' Association.
PY - 2021/5
Y1 - 2021/5
N2 - Microscale thermophoresis (MST), and the closely related Temperature Related Intensity Change (TRIC), are synonyms for a recently developed measurement technique in the field of biophysics to quantify biomolecular interactions, using the (capillary-based) NanoTemper Monolith and (multiwell plate-based) Dianthus instruments. Although this technique has been extensively used within the scientific community due to its low sample consumption, ease of use, and ubiquitous applicability, MST/TRIC has not enjoyed the unambiguous acceptance from biophysicists afforded to other biophysical techniques like isothermal titration calorimetry (ITC) or surface plasmon resonance (SPR). This might be attributed to several facts, e.g., that various (not fully understood) effects are contributing to the signal, that the technique is licensed to only a single instrument developer, NanoTemper Technology, and that its reliability and reproducibility have never been tested independently and systematically. Thus, a working group of ARBRE-MOBIEU has set up a benchmark study on MST/TRIC to assess this technique as a method to characterize biomolecular interactions. Here we present the results of this study involving 32 scientific groups within Europe and two groups from the US, carrying out experiments on 40 Monolith instruments, employing a standard operation procedure and centrally prepared samples. A protein–small molecule interaction, a newly developed protein–protein interaction system and a pure dye were used as test systems. We characterized the instrument properties and evaluated instrument performance, reproducibility, the effect of different analysis tools, the influence of the experimenter during data analysis, and thus the overall reliability of this method.
AB - Microscale thermophoresis (MST), and the closely related Temperature Related Intensity Change (TRIC), are synonyms for a recently developed measurement technique in the field of biophysics to quantify biomolecular interactions, using the (capillary-based) NanoTemper Monolith and (multiwell plate-based) Dianthus instruments. Although this technique has been extensively used within the scientific community due to its low sample consumption, ease of use, and ubiquitous applicability, MST/TRIC has not enjoyed the unambiguous acceptance from biophysicists afforded to other biophysical techniques like isothermal titration calorimetry (ITC) or surface plasmon resonance (SPR). This might be attributed to several facts, e.g., that various (not fully understood) effects are contributing to the signal, that the technique is licensed to only a single instrument developer, NanoTemper Technology, and that its reliability and reproducibility have never been tested independently and systematically. Thus, a working group of ARBRE-MOBIEU has set up a benchmark study on MST/TRIC to assess this technique as a method to characterize biomolecular interactions. Here we present the results of this study involving 32 scientific groups within Europe and two groups from the US, carrying out experiments on 40 Monolith instruments, employing a standard operation procedure and centrally prepared samples. A protein–small molecule interaction, a newly developed protein–protein interaction system and a pure dye were used as test systems. We characterized the instrument properties and evaluated instrument performance, reproducibility, the effect of different analysis tools, the influence of the experimenter during data analysis, and thus the overall reliability of this method.
KW - Benchmark
KW - Interaction
KW - K
KW - MST
KW - TRIC
KW - Thermophoresis
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U2 - 10.1007/s00249-021-01532-6
DO - 10.1007/s00249-021-01532-6
M3 - Article
C2 - 33881594
AN - SCOPUS:85104990700
SN - 0175-7571
VL - 50
SP - 411
EP - 427
JO - European Biophysics Journal
JF - European Biophysics Journal
IS - 3-4
ER -