TY - JOUR
T1 - Moving beyond regression techniques in cardiovascular risk prediction
T2 - Applying machine learning to address analytic challenges
AU - Goldstein, Benjamin A.
AU - Navar, Ann Marie
AU - Carter, Rickey E.
N1 - Publisher Copyright:
© The Author 2016. Published by Oxford University Press on behalf of the European Society of Cardiology.
PY - 2017/6/14
Y1 - 2017/6/14
N2 - Risk prediction plays an important role in clinical cardiology research. Traditionally, most risk models have been based on regression models. While useful and robust, these statistical methods are limited to using a small number of predictors which operate in the sameway on everyone, and uniformly throughout their range. The purpose of this review is to illustrate the use of machine-learning methods for development of risk prediction models. Typically presented as black box approaches, most machine-learning methods are aimed at solving particular challenges that arise in data analysis that are not well addressed by typical regression approaches. To illustrate these challenges, as well as how different methods can address them, we consider trying to predicting mortality after diagnosis of acute myocardial infarction. We use data derived from our institution's electronic health record and abstract data on 13 regularly measured laboratory markers. We walk through different challenges that arise in modelling these data and then introduce different machine-learning approaches. Finally, we discuss general issues in the application of machine-learning methods including tuning parameters, loss functions, variable importance, and missing data. Overall, this review serves as an introduction for those working on risk modelling to approach the diffuse field of machine learning.
AB - Risk prediction plays an important role in clinical cardiology research. Traditionally, most risk models have been based on regression models. While useful and robust, these statistical methods are limited to using a small number of predictors which operate in the sameway on everyone, and uniformly throughout their range. The purpose of this review is to illustrate the use of machine-learning methods for development of risk prediction models. Typically presented as black box approaches, most machine-learning methods are aimed at solving particular challenges that arise in data analysis that are not well addressed by typical regression approaches. To illustrate these challenges, as well as how different methods can address them, we consider trying to predicting mortality after diagnosis of acute myocardial infarction. We use data derived from our institution's electronic health record and abstract data on 13 regularly measured laboratory markers. We walk through different challenges that arise in modelling these data and then introduce different machine-learning approaches. Finally, we discuss general issues in the application of machine-learning methods including tuning parameters, loss functions, variable importance, and missing data. Overall, this review serves as an introduction for those working on risk modelling to approach the diffuse field of machine learning.
KW - Electronic health records
KW - Personalized medicine
KW - Precision medicine
KW - Risk prediction
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U2 - 10.1093/eurheartj/ehw302
DO - 10.1093/eurheartj/ehw302
M3 - Review article
C2 - 27436868
AN - SCOPUS:85021953748
SN - 0195-668X
VL - 38
SP - 1805
EP - 1814
JO - European Heart Journal
JF - European Heart Journal
IS - 23
ER -