TY - JOUR
T1 - Hyperspectral imaging for head and neck cancer detection
T2 - Specular glare and variance of the tumor margin in surgical specimens
AU - Halicek, Martin
AU - Fabelo, Himar
AU - Ortega, Samuel
AU - Little, James V.
AU - Wang, Xu
AU - Chen, Amy Y.
AU - Callico, Gustavo Marrero
AU - Myers, Larry
AU - Sumer, Baran D.
AU - Fei, Baowei
N1 - Funding Information:
This research was supported in part by the U.S. National Institutes of Health (NIH) Grants Nos. R21CA176684, R01CA156775, R01CA204254, and R01HL140325. H.F., S.O., and G.M.C. were supported in part by the Canary Islands Government through the ACIISI (Canarian Agency for Research, Innovation and the Information Society), ITHACA project under Grant Agreement ProID2017010164, the Spanish Government and European Union (FEDER funds) as part of support program in the context of Distributed HW/SW Platform for Intelligent Processing of Heterogeneous Sensor Data in Large Open Areas Surveillance Applications (PLATINO) project, under Contract No. TEC2017-86722-C4-1-R. This work has been also supported in part by the European Commission through the FP7 FET (Future Emerging Technologies) Open Programme ICT-2011.9.2, European Project HELICoiD under Grant Agreement No. 618080. In addition, this work has been supported in part by the 2016 PhD Training Program for Research Staff of the University of Las Palmas de Gran Canaria. Finally, this work was completed while Samuel Ortega was beneficiary of a predoctoral grant given by the “Agencia Canaria de Investigacion, Innovacion y Sociedad de la Información” (ACIISI) of the “Conserjería de Economía, Industria, Comercio y Conocimiento” of the “Gobierno de Canarias,” which is part-financed by the European Social Fund (FSE) [POC 2014-2020, Eje 3 Tema Prioritario 74 (85%)]. The authors would like to thank the surgical pathology team at Emory University Hospital Midtown for their help in collecting fresh tissue specimens. The authors would also like to thank the members of Quantitative BioImaging Laboratory at the University of Texas at Dallas and UT Southwestern Medical Center.
Publisher Copyright:
© 2019 Society of Photo-Optical Instrumentation Engineers (SPIE).
PY - 2019/7/1
Y1 - 2019/7/1
N2 - Head and neck squamous cell carcinoma (SCC) is primarily managed by surgical cancer resection. Recurrence rates after surgery can be as high as 55%, if residual cancer is present. Hyperspectral imaging (HSI) is evaluated for detection of SCC in ex-vivo surgical specimens. Several machine learning methods are investigated, including convolutional neural networks (CNNs) and a spectral-spatial classification framework based on support vector machines. Quantitative results demonstrate that additional data preprocessing and unsupervised segmentation can improve CNN results to achieve optimal performance. The methods are trained in two paradigms, with and without specular glare. Classifying regions that include specular glare degrade the overall results, but the combination of the CNN probability maps and unsupervised segmentation using a majority voting method produces an area under the curve value of 0.81 [0.80, 0.83]. As the wavelengths of light used in HSI can penetrate different depths into biological tissue, cancer margins may change with depth and create uncertainty in the ground truth. Through serial histological sectioning, the variance in the cancer margin with depth is investigated and paired with qualitative classification heat maps using the methods proposed for the testing group of SCC patients. The results determined that the validity of the top section alone as the ground truth may be limited to 1 to 2 mm. The study of specular glare and margin variation provided better understanding of the potential of HSI for the use in the operating room.
AB - Head and neck squamous cell carcinoma (SCC) is primarily managed by surgical cancer resection. Recurrence rates after surgery can be as high as 55%, if residual cancer is present. Hyperspectral imaging (HSI) is evaluated for detection of SCC in ex-vivo surgical specimens. Several machine learning methods are investigated, including convolutional neural networks (CNNs) and a spectral-spatial classification framework based on support vector machines. Quantitative results demonstrate that additional data preprocessing and unsupervised segmentation can improve CNN results to achieve optimal performance. The methods are trained in two paradigms, with and without specular glare. Classifying regions that include specular glare degrade the overall results, but the combination of the CNN probability maps and unsupervised segmentation using a majority voting method produces an area under the curve value of 0.81 [0.80, 0.83]. As the wavelengths of light used in HSI can penetrate different depths into biological tissue, cancer margins may change with depth and create uncertainty in the ground truth. Through serial histological sectioning, the variance in the cancer margin with depth is investigated and paired with qualitative classification heat maps using the methods proposed for the testing group of SCC patients. The results determined that the validity of the top section alone as the ground truth may be limited to 1 to 2 mm. The study of specular glare and margin variation provided better understanding of the potential of HSI for the use in the operating room.
KW - Cancer margin
KW - Convolutional neural networks
KW - Head and neck cancer
KW - Histology
KW - Hyperspectral imaging
KW - Squamous cell carcinoma
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UR - http://www.scopus.com/inward/citedby.url?scp=85072402378&partnerID=8YFLogxK
U2 - 10.1117/1.JMI.6.3.035004
DO - 10.1117/1.JMI.6.3.035004
M3 - Article
C2 - 31528662
AN - SCOPUS:85072402378
SN - 2329-4302
VL - 6
JO - Journal of Medical Imaging
JF - Journal of Medical Imaging
IS - 3
M1 - 035004
ER -