The laboratory information management system (LIMS) for handling the heterogeneous data from high throughput experiments in the post-genome sequencing era

Madhusudan; Ilango Vadivelu; Lothar Krause; Yuhong Ning; Stephen Lyon; Peter Morrison; Lonnie Sorrells; Ron Taussig; Shankar Subramaniam

The laboratory information management system (LIMS) for handling the heterogeneous data from high throughput experiments in the post-genome sequencing era

Madhusudan, Ilango Vadivelu, Lothar Krause, Yuhong Ning, Stephen Lyon, Peter Morrison, Lonnie Sorrells, Ron Taussig, Shankar Subramaniam

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Scopus citations

Abstract

Validation, management, and structuring of data are key components of any high throughput experimental workflow. To meet these needs for a complex multi-institutional biological project (the Alliance for Cellular Signaling), we have developed an extensive and robust laboratory information management system. The workflow in the laboratory begins with cell preparation and purification and ends with RNA transcript analysis, and phosphoprotein western blots or proteomic experiments. The software design of our system is generic, modular, and extensible.

Original language	English (US)
Title of host publication	Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04
Editors	F. Valafar, H. Valafar
Pages	98-104
Number of pages	7
State	Published - 2004
Event	Proceedings of the International Conference on Mathematics and Engineering Techniques in medicine and Biological Sciences, METMBS'04 - Las Vegas, NV, United States Duration: Jun 21 2004 → Jun 24 2004

Publication series

Name	Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04

Other

Other	Proceedings of the International Conference on Mathematics and Engineering Techniques in medicine and Biological Sciences, METMBS'04
Country/Territory	United States
City	Las Vegas, NV
Period	6/21/04 → 6/24/04

ASJC Scopus subject areas

General Engineering

Cite this

Madhusudan, Vadivelu, I., Krause, L., Ning, Y., Lyon, S., Morrison, P., Sorrells, L., Taussig, R., & Subramaniam, S. (2004). The laboratory information management system (LIMS) for handling the heterogeneous data from high throughput experiments in the post-genome sequencing era. In F. Valafar, & H. Valafar (Eds.), Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04 (pp. 98-104). (Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04).

The laboratory information management system (LIMS) for handling the heterogeneous data from high throughput experiments in the post-genome sequencing era. / Madhusudan; Vadivelu, Ilango; Krause, Lothar et al.
Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04. ed. / F. Valafar; H. Valafar. 2004. p. 98-104 (Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Madhusudan, Vadivelu, I, Krause, L, Ning, Y, Lyon, S, Morrison, P, Sorrells, L, Taussig, R & Subramaniam, S 2004, The laboratory information management system (LIMS) for handling the heterogeneous data from high throughput experiments in the post-genome sequencing era. in F Valafar & H Valafar (eds), Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04. Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04, pp. 98-104, Proceedings of the International Conference on Mathematics and Engineering Techniques in medicine and Biological Sciences, METMBS'04, Las Vegas, NV, United States, 6/21/04.

Madhusudan, Vadivelu I, Krause L, Ning Y, Lyon S, Morrison P et al. The laboratory information management system (LIMS) for handling the heterogeneous data from high throughput experiments in the post-genome sequencing era. In Valafar F, Valafar H, editors, Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04. 2004. p. 98-104. (Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04).

Madhusudan ; Vadivelu, Ilango ; Krause, Lothar et al. / The laboratory information management system (LIMS) for handling the heterogeneous data from high throughput experiments in the post-genome sequencing era. Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04. editor / F. Valafar ; H. Valafar. 2004. pp. 98-104 (Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'04).

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The laboratory information management system (LIMS) for handling the heterogeneous data from high throughput experiments in the post-genome sequencing era

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