Abstract
A repository of clinically associated Staphylococcus aureus (Sa) isolates is used to semi-automatically generate a set of application ontologies for specific subfamilies of Sa-related disease. Each such application ontology is compatible with the Infectious Disease Ontology (IDO) and uses resources from the Open Biomedical Ontology (OBO) Foundry. The set of application ontologies forms a lattice structure beneath the IDO-Core and IDO-extension reference ontologies. We show howthis lattice can be used to define a strategy for the construction of a new taxonomy of infectious disease incorporating genetic, molecular, and clinical data. We also outline how faceted browsing and query of annotated data is supported using a lattice application ontology.
| Original language | English (US) |
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| Title of host publication | CEUR Workshop Proceedings |
| Volume | 897 |
| State | Published - 2012 |
| Event | 3rd International Conference on Biomedical Ontology 2012, ICBO 2012 - Graz, Austria Duration: Jul 21 2012 → Jul 25 2012 |
Other
| Other | 3rd International Conference on Biomedical Ontology 2012, ICBO 2012 |
|---|---|
| Country/Territory | Austria |
| City | Graz |
| Period | 7/21/12 → 7/25/12 |
ASJC Scopus subject areas
- Computer Science(all)