An encyclopedia of mouse DNA elements (Mouse ENCODE)

John A. Stamatoyannopoulos; Michael Snyder; Ross Hardison; Bing Ren; Thomas Gingeras; David M. Gilbert; Mark Groudine; Michael Bender; Rajinder Kaul; Theresa Canfield; Erica Giste; Audra Johnson; Mia Zhang; Gayathri Balasundaram; Rachel Byron; Vaughan Roach; Peter J. Sabo; Richard Sandstrom; A. Sandra Stehling; Robert E. Thurman; Sherman M. Weissman; Philip Cayting; Manoj Hariharan; Jin Lian; Yong Cheng; Stephen G. Landt; Zhihai Ma; Barbara J. Wold; Job Dekker; Gregory E. Crawford; Cheryl A. Keller; Weisheng Wu; Christopher Morrissey; Swathi A. Kumar; Tejaswini Mishra; Deepti Jain; Marta Byrska-Bishop; Daniel Blankenberg; Bryan R. Lajoiel; Gaurav Jain; Amartya Sanyal; Kaun Bei Chen; Olgert Denas; James Taylor; Gerd A. Blobel; Mitchell J. Weiss; Max Pimkin; Wulan Deng; Georgi K. Marinov; Brian A. Williams; Katherine I. Fisher-Aylor; Gilberto Desalvo; Anthony Kiralusha; Diane Trout; Henry Amrhein; Ali Mortazavi; Lee Edsall; David McCleary; Samantha Kuan; Yin Shen; Feng Yue; Zhen Ye; Carrie A. Davis; Chris Zaleski; Sonali Jha; Chenghai Xue; Alex Dobin; Wei Lin; Meagan Fastuca; Huaien Wang; Roderic Guigo; Sarah Djebali; Julien Lagarde; Tyrone Ryba; Takayo Sasaki; Venkat S. Malladi; Melissa S. Cline; Vanessa M. Kirkup; Katrina Learned; Kate R. Rosenbloom; W. James Kent; Elise A. Feingold; Peter J. Good; Michael Pazin; Rebecca F. Lowdon; Leslie B. Adams

doi:10.1186/gb-2012-13-8-418

An encyclopedia of mouse DNA elements (Mouse ENCODE)

John A. Stamatoyannopoulos, Michael Snyder, Ross Hardison, Bing Ren, Thomas Gingeras, David M. Gilbert, Mark Groudine, Michael Bender, Rajinder Kaul, Theresa Canfield, Erica Giste, Audra Johnson, Mia Zhang, Gayathri Balasundaram, Rachel Byron, Vaughan Roach, Peter J. Sabo, Richard Sandstrom, A. Sandra Stehling, Robert E. ThurmanSherman M. Weissman, Philip Cayting, Manoj Hariharan, Jin Lian, Yong Cheng, Stephen G. Landt, Zhihai Ma, Barbara J. Wold, Job Dekker, Gregory E. Crawford, Cheryl A. Keller, Weisheng Wu, Christopher Morrissey, Swathi A. Kumar, Tejaswini Mishra, Deepti Jain, Marta Byrska-Bishop, Daniel Blankenberg, Bryan R. Lajoiel, Gaurav Jain, Amartya Sanyal, Kaun Bei Chen, Olgert Denas, James Taylor, Gerd A. Blobel, Mitchell J. Weiss, Max Pimkin, Wulan Deng, Georgi K. Marinov, Brian A. Williams, Katherine I. Fisher-Aylor, Gilberto Desalvo, Anthony Kiralusha, Diane Trout, Henry Amrhein, Ali Mortazavi, Lee Edsall, David McCleary, Samantha Kuan, Yin Shen, Feng Yue, Zhen Ye, Carrie A. Davis, Chris Zaleski, Sonali Jha, Chenghai Xue, Alex Dobin, Wei Lin, Meagan Fastuca, Huaien Wang, Roderic Guigo, Sarah Djebali, Julien Lagarde, Tyrone Ryba, Takayo Sasaki, Venkat S. Malladi, Melissa S. Cline, Vanessa M. Kirkup, Katrina Learned, Kate R. Rosenbloom, W. James Kent, Elise A. Feingold, Peter J. Good, Michael Pazin, Rebecca F. Lowdon, Leslie B. Adams

Research output: Contribution to journal › Letter › peer-review

345 Scopus citations

Abstract

To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse genome.

Original language	English (US)
Article number	418
Journal	Genome biology
Volume	13
Issue number	8
DOIs	https://doi.org/10.1186/gb-2012-13-8-418
State	Published - Aug 13 2012
Externally published	Yes

Keywords

Chip-seq
Comparative genomics
Dnasei hypersensitive sites
Encode project
Histone modifications
Mouse genome
Rna-seq
Transcription factor binding sites
Transcriptome

ASJC Scopus subject areas

Ecology, Evolution, Behavior and Systematics
Genetics
Cell Biology

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10.1186/gb-2012-13-8-418

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Stamatoyannopoulos, J. A., Snyder, M., Hardison, R., Ren, B., Gingeras, T., Gilbert, D. M., Groudine, M., Bender, M., Kaul, R., Canfield, T., Giste, E., Johnson, A., Zhang, M., Balasundaram, G., Byron, R., Roach, V., Sabo, P. J., Sandstrom, R., Stehling, A. S., ... Adams, L. B. (2012). An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome biology, 13(8), Article 418. https://doi.org/10.1186/gb-2012-13-8-418

Stamatoyannopoulos, JA, Snyder, M, Hardison, R, Ren, B, Gingeras, T, Gilbert, DM, Groudine, M, Bender, M, Kaul, R, Canfield, T, Giste, E, Johnson, A, Zhang, M, Balasundaram, G, Byron, R, Roach, V, Sabo, PJ, Sandstrom, R, Stehling, AS, Thurman, RE, Weissman, SM, Cayting, P, Hariharan, M, Lian, J, Cheng, Y, Landt, SG, Ma, Z, Wold, BJ, Dekker, J, Crawford, GE, Keller, CA, Wu, W, Morrissey, C, Kumar, SA, Mishra, T, Jain, D, Byrska-Bishop, M, Blankenberg, D, Lajoiel, BR, Jain, G, Sanyal, A, Chen, KB, Denas, O, Taylor, J, Blobel, GA, Weiss, MJ, Pimkin, M, Deng, W, Marinov, GK, Williams, BA, Fisher-Aylor, KI, Desalvo, G, Kiralusha, A, Trout, D, Amrhein, H, Mortazavi, A, Edsall, L, McCleary, D, Kuan, S, Shen, Y, Yue, F, Ye, Z, Davis, CA, Zaleski, C, Jha, S, Xue, C, Dobin, A, Lin, W, Fastuca, M, Wang, H, Guigo, R, Djebali, S, Lagarde, J, Ryba, T, Sasaki, T, Malladi, VS, Cline, MS, Kirkup, VM, Learned, K, Rosenbloom, KR, Kent, WJ, Feingold, EA, Good, PJ, Pazin, M, Lowdon, RF & Adams, LB 2012, 'An encyclopedia of mouse DNA elements (Mouse ENCODE)', Genome biology, vol. 13, no. 8, 418. https://doi.org/10.1186/gb-2012-13-8-418

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abstract = "To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse genome.",

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AU - Kumar, Swathi A.

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An encyclopedia of mouse DNA elements (Mouse ENCODE)

Abstract

Keywords

ASJC Scopus subject areas

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