A novel autosomal recessive non-syndromic hearing impairment locus (DFNB47) maps to chromosome 2p25.1-p24.3

Muhammad Jawad Hassan; Regie Lyn P. Santos; Muhammad Arshad Rafiq; Maria H. Chahrour; Thanh L. Pham; Muhammad Wajid; Nadine Hijab; Michael Wambangco; Kwanghyuk Lee; Muhammad Ansar; Kai Yan; Wasim Ahmad; Suzanne M. Leal

doi:10.1007/s00439-005-0079-8

A novel autosomal recessive non-syndromic hearing impairment locus (DFNB47) maps to chromosome 2p25.1-p24.3

Muhammad Jawad Hassan, Regie Lyn P. Santos, Muhammad Arshad Rafiq, Maria H. Chahrour, Thanh L. Pham, Muhammad Wajid, Nadine Hijab, Michael Wambangco, Kwanghyuk Lee, Muhammad Ansar, Kai Yan, Wasim Ahmad, Suzanne M. Leal

Research output: Contribution to journal › Article › peer-review

9 Scopus citations

Abstract

Hereditary hearing impairment (HI) displays extensive genetic heterogeneity. Autosomal recessive (AR) forms of prelingual HI account for ∼75% of cases with a genetic etiology. A novel AR non-syndromic HI locus (DFNB47) was mapped to chromosome 2p25.1-p24.3, in two distantly related Pakistani kindreds. Genome scan and fine mapping were carried out using microsatellite markers. Multipoint linkage analysis resulted in a maximum LOD score of 4.7 at markers D2S1400 and D2S262. The three-unit support interval was bounded by D2S330 and D2S131. The region of homozygosity was found within the three-unit support interval and flanked by markers D2S2952 and D2S131, which corresponds to 13.2 cM according to the Rutgers combined linkage-physical map. This region contains 5.3 Mb according to the sequence-based physical map. Three candidate genes, KCNF1, ID2 and ATP6V1C2 were sequenced, and were found to be negative for functional sequence variants.

Original language	English (US)
Pages (from-to)	605-610
Number of pages	6
Journal	Human genetics
Volume	118
Issue number	5
DOIs	https://doi.org/10.1007/s00439-005-0079-8
State	Published - Jan 2006

ASJC Scopus subject areas

Genetics
Genetics(clinical)

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@article{19eed75d05f74076884e18c7eefe1519,

title = "A novel autosomal recessive non-syndromic hearing impairment locus (DFNB47) maps to chromosome 2p25.1-p24.3",

abstract = "Hereditary hearing impairment (HI) displays extensive genetic heterogeneity. Autosomal recessive (AR) forms of prelingual HI account for ∼75% of cases with a genetic etiology. A novel AR non-syndromic HI locus (DFNB47) was mapped to chromosome 2p25.1-p24.3, in two distantly related Pakistani kindreds. Genome scan and fine mapping were carried out using microsatellite markers. Multipoint linkage analysis resulted in a maximum LOD score of 4.7 at markers D2S1400 and D2S262. The three-unit support interval was bounded by D2S330 and D2S131. The region of homozygosity was found within the three-unit support interval and flanked by markers D2S2952 and D2S131, which corresponds to 13.2 cM according to the Rutgers combined linkage-physical map. This region contains 5.3 Mb according to the sequence-based physical map. Three candidate genes, KCNF1, ID2 and ATP6V1C2 were sequenced, and were found to be negative for functional sequence variants.",

author = "Hassan, {Muhammad Jawad} and Santos, {Regie Lyn P.} and Rafiq, {Muhammad Arshad} and Chahrour, {Maria H.} and Pham, {Thanh L.} and Muhammad Wajid and Nadine Hijab and Michael Wambangco and Kwanghyuk Lee and Muhammad Ansar and Kai Yan and Wasim Ahmad and Leal, {Suzanne M.}",

note = "Funding Information: Acknowledgements We wish to thank the family members for their invaluable participation and cooperation. This work was supported by the Higher Education Commission, Pakistan, the American Hearing Research Foundation, and the National Institutes of Health—National Institute of Deafness and other Communication Disorders grant R01-DC03594. Genotyping services were provided by the Center for Inherited Disease Research (CIDR). CIDR is fully funded through a federal contract from the National Institutes of Health to The Johns Hopkins University, Contract Number N01-HG-65403.",

year = "2006",

month = jan,

doi = "10.1007/s00439-005-0079-8",

language = "English (US)",

volume = "118",

pages = "605--610",

journal = "Human genetics",

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AU - Hassan, Muhammad Jawad

AU - Santos, Regie Lyn P.

AU - Rafiq, Muhammad Arshad

AU - Chahrour, Maria H.

AU - Pham, Thanh L.

AU - Wajid, Muhammad

AU - Hijab, Nadine

AU - Wambangco, Michael

AU - Lee, Kwanghyuk

AU - Ansar, Muhammad

AU - Yan, Kai

AU - Ahmad, Wasim

AU - Leal, Suzanne M.

N1 - Funding Information: Acknowledgements We wish to thank the family members for their invaluable participation and cooperation. This work was supported by the Higher Education Commission, Pakistan, the American Hearing Research Foundation, and the National Institutes of Health—National Institute of Deafness and other Communication Disorders grant R01-DC03594. Genotyping services were provided by the Center for Inherited Disease Research (CIDR). CIDR is fully funded through a federal contract from the National Institutes of Health to The Johns Hopkins University, Contract Number N01-HG-65403.

PY - 2006/1

Y1 - 2006/1

N2 - Hereditary hearing impairment (HI) displays extensive genetic heterogeneity. Autosomal recessive (AR) forms of prelingual HI account for ∼75% of cases with a genetic etiology. A novel AR non-syndromic HI locus (DFNB47) was mapped to chromosome 2p25.1-p24.3, in two distantly related Pakistani kindreds. Genome scan and fine mapping were carried out using microsatellite markers. Multipoint linkage analysis resulted in a maximum LOD score of 4.7 at markers D2S1400 and D2S262. The three-unit support interval was bounded by D2S330 and D2S131. The region of homozygosity was found within the three-unit support interval and flanked by markers D2S2952 and D2S131, which corresponds to 13.2 cM according to the Rutgers combined linkage-physical map. This region contains 5.3 Mb according to the sequence-based physical map. Three candidate genes, KCNF1, ID2 and ATP6V1C2 were sequenced, and were found to be negative for functional sequence variants.

AB - Hereditary hearing impairment (HI) displays extensive genetic heterogeneity. Autosomal recessive (AR) forms of prelingual HI account for ∼75% of cases with a genetic etiology. A novel AR non-syndromic HI locus (DFNB47) was mapped to chromosome 2p25.1-p24.3, in two distantly related Pakistani kindreds. Genome scan and fine mapping were carried out using microsatellite markers. Multipoint linkage analysis resulted in a maximum LOD score of 4.7 at markers D2S1400 and D2S262. The three-unit support interval was bounded by D2S330 and D2S131. The region of homozygosity was found within the three-unit support interval and flanked by markers D2S2952 and D2S131, which corresponds to 13.2 cM according to the Rutgers combined linkage-physical map. This region contains 5.3 Mb according to the sequence-based physical map. Three candidate genes, KCNF1, ID2 and ATP6V1C2 were sequenced, and were found to be negative for functional sequence variants.

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JF - Human genetics

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ER -

A novel autosomal recessive non-syndromic hearing impairment locus (DFNB47) maps to chromosome 2p25.1-p24.3

Abstract

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